GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Bdistachyon_Bradi2g03195 Bradi2g03195	Bd2	2311403	2312958	Phytozome	v3.1	Brachypodium_distachyon	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Bdistachyon_Bradi2g03195.1 Bradi2g03195.1 PAC:32778255	High	No	1477		Get ORF Coding potential... Type: noncoding Potential: -1.143 Folding energies... MFEI: -27.583 AMFE: -0.622 GC content %: 44.347
Bdistachyon_Bradi2g03195.2 Bradi2g03195.2 PAC:32778256	High	No	1186		Get ORF Coding potential... Type: noncoding Potential: -1.210 Folding energies... MFEI: -28.002 AMFE: -0.614 GC content %: 45.616

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).