GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Bdistachyon_Bradi2g04880 Bradi2g04880	Bd2	3506691	3507697	Phytozome	v3.1	Brachypodium_distachyon	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Bdistachyon_Bradi2g04880.1 Bradi2g04880.1 PAC:32781008	High	No	925		Get ORF Coding potential... Type: noncoding Potential: -0.978 Folding energies... MFEI: -29.838 AMFE: -0.592 GC content %: 50.378
Bdistachyon_Bradi2g04880.2 Bradi2g04880.2 PAC:32781009	High	No	869		Get ORF Coding potential... Type: noncoding Potential: -1.034 Folding energies... MFEI: -29.896 AMFE: -0.586 GC content %: 50.978

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).