GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Bdistachyon_Bradi2g14685 Bradi2g14685	Bd2	13201247	13206179	Phytozome	v3.1	Brachypodium_distachyon	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Bdistachyon_Bradi2g14685.1 Bradi2g14685.1 PAC:32779266	High	No	1838		Get ORF Coding potential... Type: noncoding Potential: -1.212 Folding energies... MFEI: -26.926 AMFE: -0.646 GC content %: 41.676
Bdistachyon_Bradi2g14685.2 Bradi2g14685.2 PAC:32779267	High	No	589		Get ORF Coding potential... Type: noncoding Potential: -1.204 Folding energies... MFEI: -30.017 AMFE: -0.650 GC content %: 46.180

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).