GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Bdistachyon_Bradi2g17064 Bradi2g17064	Bd2	15212804	15221675	Phytozome	v3.1	Brachypodium_distachyon	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Bdistachyon_Bradi2g17064.1 Bradi2g17064.1 PAC:32779829	Low	Yes	1049		Get ORF Coding potential... Type: noncoding Potential: -0.894 Folding energies... MFEI: -33.956 AMFE: -0.673 GC content %: 50.429
Bdistachyon_Bradi2g17064.2 Bradi2g17064.2 PAC:32779831	High	No	678		Get ORF Coding potential... Type: noncoding Potential: -1.046 Folding energies... MFEI: -30.398 AMFE: -0.603 GC content %: 50.442
Bdistachyon_Bradi2g17064.3 Bradi2g17064.3 PAC:32779830	High	No	657		Get ORF Coding potential... Type: noncoding Potential: -1.042 Folding energies... MFEI: -29.848 AMFE: -0.585 GC content %: 50.989

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).