GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Bdistachyon_Bradi2g23845 Bradi2g23845	Bd2	21604555	21606179	Phytozome	v3.1	Brachypodium_distachyon	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Bdistachyon_Bradi2g23845.1 Bradi2g23845.1 PAC:32772459	High	No	451		Get ORF Coding potential... Type: noncoding Potential: -0.777 Folding energies... MFEI: -28.692 AMFE: -0.555 GC content %: 51.663
Bdistachyon_Bradi2g23845.2 Bradi2g23845.2 PAC:32772460	High	No	746		Get ORF Coding potential... Type: noncoding Potential: -0.985 Folding energies... MFEI: -31.220 AMFE: -0.636 GC content %: 49.062

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).