GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Bdistachyon_Bradi2g24952 Bradi2g24952	Bd2	22737860	22741192	Phytozome	v3.1	Brachypodium_distachyon	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Bdistachyon_Bradi2g24952.1 Bradi2g24952.1 PAC:32779383	High	No	1880		Get ORF Coding potential... Type: noncoding Potential: -0.932 Folding energies... MFEI: -26.154 AMFE: -0.656 GC content %: 39.840
Bdistachyon_Bradi2g24952.2 Bradi2g24952.2 PAC:32779384	High	No	1012		Get ORF Coding potential... Type: noncoding Potential: -0.840 Folding energies... MFEI: -29.634 AMFE: -0.661 GC content %: 44.862
Bdistachyon_Bradi2g24952.3 Bradi2g24952.3 PAC:32779385	High	No	761		Get ORF Coding potential... Type: noncoding Potential: -0.780 Folding energies... MFEI: -30.184 AMFE: -0.628 GC content %: 48.095

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).