Gene
Bdistachyon Bradi2g33657
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Bdistachyon_Bradi2g33657 Bradi2g33657 |
Bd2 | 33549476 | 33558851 | Phytozome | v3.1 | Brachypodium_distachyon | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Bdistachyon_Bradi2g33657.1 Bradi2g33657.1 PAC:32773655 |
High | No | 1325 | Get ORF Coding potential... Type: noncoding Potential: -0.882 Folding energies... MFEI: -26.558 AMFE: -0.588 GC content %: 45.132 | |
| Bdistachyon_Bradi2g33657.10 Bradi2g33657.10 PAC:32773664 |
High | No | 932 | Get ORF Coding potential... Type: noncoding Potential: -0.733 Folding energies... MFEI: -26.878 AMFE: -0.642 GC content %: 41.845 | |
| Bdistachyon_Bradi2g33657.11 Bradi2g33657.11 PAC:32773665 |
High | No | 904 | Get ORF Coding potential... Type: noncoding Potential: -0.725 Folding energies... MFEI: -27.876 AMFE: -0.601 GC content %: 46.350 | |
| Bdistachyon_Bradi2g33657.12 Bradi2g33657.12 PAC:32773667 |
High | No | 835 | Get ORF Coding potential... Type: noncoding Potential: -0.897 Folding energies... MFEI: -29.030 AMFE: -0.576 GC content %: 50.419 | |
| Bdistachyon_Bradi2g33657.13 Bradi2g33657.13 PAC:32773666 |
High | No | 737 | Get ORF Coding potential... Type: noncoding Potential: -0.866 Folding energies... MFEI: -30.204 AMFE: -0.559 GC content %: 54.003 | |
| Bdistachyon_Bradi2g33657.2 Bradi2g33657.2 PAC:32773661 |
High | No | 1219 | Get ORF Coding potential... Type: noncoding Potential: -0.864 Folding energies... MFEI: -27.235 AMFE: -0.605 GC content %: 45.037 | |
| Bdistachyon_Bradi2g33657.3 Bradi2g33657.3 PAC:32773660 |
High | No | 1184 | Get ORF Coding potential... Type: noncoding Potential: -0.857 Folding energies... MFEI: -27.035 AMFE: -0.607 GC content %: 44.510 | |
| Bdistachyon_Bradi2g33657.4 Bradi2g33657.4 PAC:32773658 |
High | No | 1037 | Get ORF Coding potential... Type: noncoding Potential: -0.825 Folding energies... MFEI: -26.866 AMFE: -0.648 GC content %: 41.466 | |
| Bdistachyon_Bradi2g33657.5 Bradi2g33657.5 PAC:32773659 |
High | No | 1189 | Get ORF Coding potential... Type: noncoding Potential: -0.858 Folding energies... MFEI: -27.300 AMFE: -0.614 GC content %: 44.491 | |
| Bdistachyon_Bradi2g33657.6 Bradi2g33657.6 PAC:32773656 |
High | No | 898 | Get ORF Coding potential... Type: noncoding Potential: -0.787 Folding energies... MFEI: -26.849 AMFE: -0.659 GC content %: 40.757 | |
| Bdistachyon_Bradi2g33657.7 Bradi2g33657.7 PAC:32773657 |
High | No | 1041 | Get ORF Coding potential... Type: noncoding Potential: -0.826 Folding energies... MFEI: -27.205 AMFE: -0.657 GC content %: 41.402 | |
| Bdistachyon_Bradi2g33657.8 Bradi2g33657.8 PAC:32773662 |
High | No | 879 | Get ORF Coding potential... Type: noncoding Potential: -0.727 Folding energies... MFEI: -26.997 AMFE: -0.641 GC content %: 42.093 | |
| Bdistachyon_Bradi2g33657.9 Bradi2g33657.9 PAC:32773663 |
High | No | 890 | Get ORF Coding potential... Type: noncoding Potential: -0.730 Folding energies... MFEI: -27.360 AMFE: -0.590 GC content %: 46.404 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
