GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Bdistachyon_Bradi2g36893 Bradi2g36893	Bd2	37058392	37059462	Phytozome	v3.1	Brachypodium_distachyon	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Bdistachyon_Bradi2g36893.1 Bradi2g36893.1 PAC:32777899	High	No	908		Get ORF Coding potential... Type: noncoding Potential: -0.954 Folding energies... MFEI: -26.729 AMFE: -0.564 GC content %: 47.357
Bdistachyon_Bradi2g36893.2 Bradi2g36893.2 PAC:32777900	High	No	631		Get ORF Coding potential... Type: noncoding Potential: -0.999 Folding energies... MFEI: -27.655 AMFE: -0.540 GC content %: 51.189

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).