Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Bdistachyon_Bradi2g37587 Bradi2g37587 |
Bd2 | 37696403 | 37699477 | Phytozome | v3.1 | Brachypodium_distachyon | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Bdistachyon_Bradi2g37587.1 Bradi2g37587.1 PAC:32776982 |
Low | No | 1318 | Get ORF Coding potential... Type: noncoding Potential: -0.438 Folding energies... MFEI: -29.416 AMFE: -0.494 GC content %: 59.560 | |
Bdistachyon_Bradi2g37587.2 Bradi2g37587.2 PAC:32776983 |
Low | No | 1237 | Get ORF Coding potential... Type: noncoding Potential: -0.430 Folding energies... MFEI: -29.394 AMFE: -0.487 GC content %: 60.388 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Bdistachyon_Bradi2g37587.1 | RepBase (RepeatMasker) | 2014-01-31 | Gypsy-35_BD-I | |
Bdistachyon_Bradi2g37587.2 | RepBase (RepeatMasker) | 2014-01-31 | Gypsy-35_BD-I |