GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Bdistachyon_Bradi2g44065 Bradi2g44065	Bd2	44324371	44329898	Phytozome	v3.1	Brachypodium_distachyon	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Bdistachyon_Bradi2g44065.2 Bradi2g44065.2 PAC:32773471	High	No	1734		Get ORF Coding potential... Type: noncoding Potential: -1.401 Folding energies... MFEI: -32.180 AMFE: -0.653 GC content %: 49.308
Bdistachyon_Bradi2g44065.4 Bradi2g44065.4 PAC:32773468	High	No	1544		Get ORF Coding potential... Type: noncoding Potential: -1.114 Folding energies... MFEI: -29.268 AMFE: -0.625 GC content %: 46.826
Bdistachyon_Bradi2g44065.5 Bradi2g44065.5 PAC:32773470	High	No	2073		Get ORF Coding potential... Type: noncoding Potential: -1.383 Folding energies... MFEI: -31.423 AMFE: -0.660 GC content %: 47.612
Bdistachyon_Bradi2g44065.6 Bradi2g44065.6 PAC:32773469	High	No	1673		Get ORF Coding potential... Type: noncoding Potential: -1.399 Folding energies... MFEI: -32.546 AMFE: -0.654 GC content %: 49.791

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).