Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Bdistachyon_Bradi2g49425 Bradi2g49425 |
Bd2 | 49309450 | 49312618 | Phytozome | v3.1 | Brachypodium_distachyon | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Bdistachyon_Bradi2g49425.1 Bradi2g49425.1 PAC:32781757 |
Low | Yes | 799 | Get ORF Coding potential... Type: noncoding Potential: -1.074 Folding energies... MFEI: -29.587 AMFE: -0.734 GC content %: 40.300 | |
Bdistachyon_Bradi2g49425.2 Bradi2g49425.2 PAC:32781756 |
Low | Yes | 2734 | Get ORF Coding potential... Type: noncoding Potential: -1.149 Folding energies... MFEI: -26.832 AMFE: -0.684 GC content %: 39.210 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Bdistachyon_Bradi2g49425.2 | RepBase (RepeatMasker) | 2014-01-31 | ICARUS_TM | |
Bdistachyon_Bradi2g49425.1 | Rfam | 11.0 | MIR1122 | 3.6e-12 |
Bdistachyon_Bradi2g49425.2 | Rfam | 11.0 | MIR1122 | 1.2e-11 |
Bdistachyon_Bradi2g49425.1 | RepBase (RepeatMasker) | 2014-01-31 | ICARUS_TM |