Gene
Bdistachyon Bradi2g50130
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Bdistachyon_Bradi2g50130 Bradi2g50130 |
Bd2 | 49840028 | 49843069 | Phytozome | v3.1 | Brachypodium_distachyon | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Bdistachyon_Bradi2g50130.10 Bradi2g50130.10 PAC:32778669 |
High | No | 927 | Get ORF Coding potential... Type: noncoding Potential: -1.101 Folding energies... MFEI: -30.334 AMFE: -0.610 GC content %: 49.730 | |
| Bdistachyon_Bradi2g50130.11 Bradi2g50130.11 PAC:32778668 |
High | No | 738 | Get ORF Coding potential... Type: noncoding Potential: -1.030 Folding energies... MFEI: -31.680 AMFE: -0.604 GC content %: 52.439 | |
| Bdistachyon_Bradi2g50130.12 Bradi2g50130.12 PAC:32778660 |
High | No | 1529 | Get ORF Coding potential... Type: noncoding Potential: -1.235 Folding energies... MFEI: -28.574 AMFE: -0.634 GC content %: 45.062 | |
| Bdistachyon_Bradi2g50130.13 Bradi2g50130.13 PAC:32778662 |
High | No | 810 | Get ORF Coding potential... Type: noncoding Potential: -0.955 Folding energies... MFEI: -31.765 AMFE: -0.619 GC content %: 51.358 | |
| Bdistachyon_Bradi2g50130.14 Bradi2g50130.14 PAC:32778664 |
High | No | 1313 | Get ORF Coding potential... Type: noncoding Potential: -1.177 Folding energies... MFEI: -29.132 AMFE: -0.626 GC content %: 46.535 | |
| Bdistachyon_Bradi2g50130.15 Bradi2g50130.15 PAC:32778665 |
High | No | 810 | Get ORF Coding potential... Type: noncoding Potential: -1.066 Folding energies... MFEI: -30.988 AMFE: -0.596 GC content %: 51.975 | |
| Bdistachyon_Bradi2g50130.16 Bradi2g50130.16 PAC:32778666 |
High | No | 737 | Get ORF Coding potential... Type: noncoding Potential: -1.041 Folding energies... MFEI: -31.221 AMFE: -0.588 GC content %: 53.053 | |
| Bdistachyon_Bradi2g50130.6 Bradi2g50130.6 PAC:32778661 |
High | No | 954 | Get ORF Coding potential... Type: noncoding Potential: -1.198 Folding energies... MFEI: -30.273 AMFE: -0.614 GC content %: 49.266 | |
| Bdistachyon_Bradi2g50130.7 Bradi2g50130.7 PAC:32778663 |
High | No | 1000 | Get ORF Coding potential... Type: noncoding Potential: -1.007 Folding energies... MFEI: -30.360 AMFE: -0.618 GC content %: 49.100 | |
| Bdistachyon_Bradi2g50130.8 Bradi2g50130.8 PAC:32778667 |
High | No | 1027 | Get ORF Coding potential... Type: noncoding Potential: -1.205 Folding energies... MFEI: -29.873 AMFE: -0.614 GC content %: 48.685 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
