GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Bdistachyon_Bradi2g56412 Bradi2g56412	Bd2	54520544	54526105	Phytozome	v3.1	Brachypodium_distachyon	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Bdistachyon_Bradi2g56412.1 Bradi2g56412.1 PAC:32780629	Low	Yes	2114		Get ORF Coding potential... Type: noncoding Potential: -1.246 Folding energies... MFEI: -33.202 AMFE: -0.702 GC content %: 47.304
Bdistachyon_Bradi2g56412.2 Bradi2g56412.2 PAC:32780630	Low	Yes	1989		Get ORF Coding potential... Type: noncoding Potential: -1.243 Folding energies... MFEI: -34.575 AMFE: -0.683 GC content %: 50.628
Bdistachyon_Bradi2g56412.3 Bradi2g56412.3 PAC:32780631	Low	Yes	962		Get ORF Coding potential... Type: noncoding Potential: -1.033 Folding energies... MFEI: -37.391 AMFE: -0.686 GC content %: 54.470

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).