GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Bdistachyon_Bradi2g58882 Bradi2g58882	Bd2	56461658	56463423	Phytozome	v3.1	Brachypodium_distachyon	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Bdistachyon_Bradi2g58882.1 Bradi2g58882.1 PAC:32781410	High	No	1066		Get ORF Coding potential... Type: noncoding Potential: -1.153 Folding energies... MFEI: -30.872 AMFE: -0.652 GC content %: 47.373
Bdistachyon_Bradi2g58882.2 Bradi2g58882.2 PAC:32781411	High	No	1046		Get ORF Coding potential... Type: noncoding Potential: -1.149 Folding energies... MFEI: -31.549 AMFE: -0.663 GC content %: 47.610

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).