GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Bdistachyon_Bradi2g60790 Bradi2g60790	Bd2	57864209	57865707	Phytozome	v3.1	Brachypodium_distachyon	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Bdistachyon_Bradi2g60790.11 Bradi2g60790.11 PAC:32776323	High	No	1049		Get ORF Coding potential... Type: noncoding Potential: -0.812 Folding energies... MFEI: -28.170 AMFE: -0.617 GC content %: 45.663
Bdistachyon_Bradi2g60790.7 Bradi2g60790.7 PAC:32776322	High	No	1172		Get ORF Coding potential... Type: noncoding Potential: -0.837 Folding energies... MFEI: -27.713 AMFE: -0.599 GC content %: 46.246

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).