Gene
Bdistachyon Bradi2g62100
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Bdistachyon_Bradi2g62100 Bradi2g62100 |
Bd2 | 58703659 | 58705908 | Phytozome | v3.1 | Brachypodium_distachyon | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Bdistachyon_Bradi2g62100.1 Bradi2g62100.1 PAC:32776120 |
Low | Yes | 1462 | Get ORF Coding potential... Type: noncoding Potential: -0.818 Folding energies... MFEI: -37.544 AMFE: -0.722 GC content %: 51.984 | |
| Bdistachyon_Bradi2g62100.2 Bradi2g62100.2 PAC:32776115 |
Low | Yes | 1669 | Get ORF Coding potential... Type: noncoding Potential: -0.732 Folding energies... MFEI: -36.429 AMFE: -0.703 GC content %: 51.827 | |
| Bdistachyon_Bradi2g62100.3 Bradi2g62100.3 PAC:32776119 |
Low | Yes | 1626 | Get ORF Coding potential... Type: noncoding Potential: -0.726 Folding energies... MFEI: -37.030 AMFE: -0.712 GC content %: 52.030 | |
| Bdistachyon_Bradi2g62100.4 Bradi2g62100.4 PAC:32776116 |
Low | Yes | 1505 | Get ORF Coding potential... Type: noncoding Potential: -0.822 Folding energies... MFEI: -36.890 AMFE: -0.713 GC content %: 51.761 | |
| Bdistachyon_Bradi2g62100.5 Bradi2g62100.5 PAC:32776117 |
Low | Yes | 1585 | Get ORF Coding potential... Type: noncoding Potential: -0.720 Folding energies... MFEI: -34.915 AMFE: -0.687 GC content %: 50.852 | |
| Bdistachyon_Bradi2g62100.6 Bradi2g62100.6 PAC:32776118 |
Low | Yes | 1542 | Get ORF Coding potential... Type: noncoding Potential: -0.714 Folding energies... MFEI: -35.344 AMFE: -0.693 GC content %: 51.038 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
