Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Bdistachyon_Bradi3g05945 Bradi3g05945 |
Bd3 | 4238023 | 4240593 | Phytozome | v3.1 | Brachypodium_distachyon | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Bdistachyon_Bradi3g05945.1 Bradi3g05945.1 PAC:32817662 |
Low | Yes | 1672 | Get ORF Coding potential... Type: noncoding Potential: -1.061 Folding energies... MFEI: -32.189 AMFE: -0.687 GC content %: 46.830 | |
Bdistachyon_Bradi3g05945.2 Bradi3g05945.2 PAC:32817663 |
High | No | 626 | Get ORF Coding potential... Type: noncoding Potential: -0.859 Folding energies... MFEI: -31.486 AMFE: -0.630 GC content %: 50.000 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Bdistachyon_Bradi3g05945.1 | Rfam | 11.0 | MIR1122 | 5.8e-4 |
Bdistachyon_Bradi3g05945.1 | RepBase (RepeatMasker) | 2014-01-31 | LINE1-59_SBi |