GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Bdistachyon_Bradi3g13887 Bradi3g13887	Bd3	12386666	12389804	Phytozome	v3.1	Brachypodium_distachyon	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Bdistachyon_Bradi3g13887.1 Bradi3g13887.1 PAC:32817785	High	No	2471		Get ORF Coding potential... Type: noncoding Potential: -1.055 Folding energies... MFEI: -27.564 AMFE: -0.567 GC content %: 48.604
Bdistachyon_Bradi3g13887.2 Bradi3g13887.2 PAC:32817787	High	No	2439		Get ORF Coding potential... Type: noncoding Potential: -1.054 Folding energies... MFEI: -27.524 AMFE: -0.565 GC content %: 48.708
Bdistachyon_Bradi3g13887.3 Bradi3g13887.3 PAC:32817786	High	No	2388		Get ORF Coding potential... Type: noncoding Potential: -1.052 Folding energies... MFEI: -27.374 AMFE: -0.561 GC content %: 48.786

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).