Gene
Bdistachyon Bradi3g18583
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Bdistachyon_Bradi3g18583 Bradi3g18583 |
Bd3 | 17161419 | 17163286 | Phytozome | v3.1 | Brachypodium_distachyon | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Bdistachyon_Bradi3g18583.1 Bradi3g18583.1 PAC:32815593 |
High | No | 1154 | Get ORF Coding potential... Type: noncoding Potential: -1.179 Folding energies... MFEI: -33.622 AMFE: -0.687 GC content %: 48.960 | |
| Bdistachyon_Bradi3g18583.2 Bradi3g18583.2 PAC:32815594 |
High | No | 473 | Get ORF Coding potential... Type: noncoding Potential: -1.023 Folding energies... MFEI: -37.548 AMFE: -0.660 GC content %: 56.871 | |
| Bdistachyon_Bradi3g18583.3 Bradi3g18583.3 PAC:32815595 |
High | No | 690 | Get ORF Coding potential... Type: noncoding Potential: -1.254 Folding energies... MFEI: -34.594 AMFE: -0.663 GC content %: 52.174 | |
| Bdistachyon_Bradi3g18583.4 Bradi3g18583.4 PAC:32815596 |
High | No | 619 | Get ORF Coding potential... Type: noncoding Potential: -1.242 Folding energies... MFEI: -34.798 AMFE: -0.657 GC content %: 52.989 | |
| Bdistachyon_Bradi3g18583.5 Bradi3g18583.5 PAC:32815597 |
High | No | 498 | Get ORF Coding potential... Type: noncoding Potential: -1.030 Folding energies... MFEI: -37.952 AMFE: -0.670 GC content %: 56.627 | |
| Bdistachyon_Bradi3g18583.6 Bradi3g18583.6 PAC:32815598 |
High | No | 715 | Get ORF Coding potential... Type: noncoding Potential: -1.257 Folding energies... MFEI: -34.713 AMFE: -0.665 GC content %: 52.168 | |
| Bdistachyon_Bradi3g18583.7 Bradi3g18583.7 PAC:32815599 |
High | No | 644 | Get ORF Coding potential... Type: noncoding Potential: -1.246 Folding energies... MFEI: -35.264 AMFE: -0.666 GC content %: 52.950 | |
| Bdistachyon_Bradi3g18583.8 Bradi3g18583.8 PAC:32815600 |
High | No | 1174 | Get ORF Coding potential... Type: noncoding Potential: -1.404 Folding energies... MFEI: -33.612 AMFE: -0.686 GC content %: 48.978 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
