GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Bdistachyon_Bradi3g19931 Bradi3g19931	Bd3	18973954	18975727	Phytozome	v3.1	Brachypodium_distachyon	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Bdistachyon_Bradi3g19931.1 Bradi3g19931.1 PAC:32823106	Low	Yes	948		Get ORF Coding potential... Type: noncoding Potential: -1.149 Folding energies... MFEI: -35.348 AMFE: -0.680 GC content %: 52.004
Bdistachyon_Bradi3g19931.2 Bradi3g19931.2 PAC:32823107	Low	Yes	735		Get ORF Coding potential... Type: noncoding Potential: -1.105 Folding energies... MFEI: -35.361 AMFE: -0.691 GC content %: 51.156

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).