GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Bdistachyon_Bradi3g30718 Bradi3g30718	Bd3	32654419	32655460	Phytozome	v3.1	Brachypodium_distachyon	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Bdistachyon_Bradi3g30718.1 Bradi3g30718.1 PAC:32813035	High	No	921		Get ORF Coding potential... Type: noncoding Potential: -1.141 Folding energies... MFEI: -37.112 AMFE: -0.654 GC content %: 56.786
Bdistachyon_Bradi3g30718.2 Bradi3g30718.2 PAC:32813036	High	No	829		Get ORF Coding potential... Type: noncoding Potential: -1.117 Folding energies... MFEI: -38.046 AMFE: -0.667 GC content %: 57.057
Bdistachyon_Bradi3g30718.3 Bradi3g30718.3 PAC:32813037	High	No	829		Get ORF Coding potential... Type: noncoding Potential: -1.117 Folding energies... MFEI: -36.960 AMFE: -0.649 GC content %: 56.936

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).