Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Bdistachyon_Bradi3g38885 Bradi3g38885 |
Bd3 | 41095358 | 41097650 | Phytozome | v3.1 | Brachypodium_distachyon | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Bdistachyon_Bradi3g38885.1 Bradi3g38885.1 PAC:32814135 |
Low | Yes | 2058 | Get ORF Coding potential... Type: noncoding Potential: -0.986 Folding energies... MFEI: -27.711 AMFE: -0.770 GC content %: 36.006 | |
Bdistachyon_Bradi3g38885.2 Bradi3g38885.2 PAC:32814136 |
Low | Yes | 2051 | Get ORF Coding potential... Type: noncoding Potential: -0.986 Folding energies... MFEI: -27.874 AMFE: -0.777 GC content %: 35.885 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Bdistachyon_Bradi3g38885.2 | RepBase (RepeatMasker) | 2014-01-31 | TREP216 | |
Bdistachyon_Bradi3g38885.1 | Rfam | 11.0 | MIR1122 | 5.4e-13 |
Bdistachyon_Bradi3g38885.2 | Rfam | 11.0 | MIR1122 | 5.4e-13 |
Bdistachyon_Bradi3g38885.1 | RepBase (RepeatMasker) | 2014-01-31 | TREP216 |