GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Bdistachyon_Bradi3g41282 Bradi3g41282	Bd3	42980069	42982372	Phytozome	v3.1	Brachypodium_distachyon	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Bdistachyon_Bradi3g41282.1 Bradi3g41282.1 PAC:32820123	High	No	1206		Get ORF Coding potential... Type: noncoding Potential: -0.851 Folding energies... MFEI: -32.040 AMFE: -0.571 GC content %: 56.136
Bdistachyon_Bradi3g41282.2 Bradi3g41282.2 PAC:32820124	High	No	1604		Get ORF Coding potential... Type: noncoding Potential: -0.887 Folding energies... MFEI: -32.057 AMFE: -0.628 GC content %: 51.060
Bdistachyon_Bradi3g41282.3 Bradi3g41282.3 PAC:32820125	High	No	986		Get ORF Coding potential... Type: noncoding Potential: -0.825 Folding energies... MFEI: -35.101 AMFE: -0.651 GC content %: 53.955
Bdistachyon_Bradi3g41282.4 Bradi3g41282.4 PAC:32820122	High	No	892		Get ORF Coding potential... Type: noncoding Potential: -0.813 Folding energies... MFEI: -33.531 AMFE: -0.608 GC content %: 55.157
Bdistachyon_Bradi3g41282.5 Bradi3g41282.5 PAC:32820121	High	No	1293		Get ORF Coding potential... Type: noncoding Potential: -0.860 Folding energies... MFEI: -33.457 AMFE: -0.680 GC content %: 49.188

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).