Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Bdistachyon_Bradi3g41507 Bradi3g41507 |
Bd3 | 43193572 | 43199569 | Phytozome | v3.1 | Brachypodium_distachyon | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Bdistachyon_Bradi3g41507.1 Bradi3g41507.1 PAC:32819521 |
Low | Yes | 5099 | Get ORF Coding potential... Type: noncoding Potential: -1.229 Folding energies... MFEI: -30.447 AMFE: -0.707 GC content %: 43.048 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Bdistachyon_Bradi3g41507.1 | Rfam | 11.0 | MIR169_2 | 6.0e-15 |
Bdistachyon_Bradi3g41507.1 | RepBase (RepeatMasker) | 2014-01-31 | TREP216 |