Gene
Bdistachyon Bradi3g43185
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Bdistachyon_Bradi3g43185 Bradi3g43185 |
Bd3 | 44280713 | 44283735 | Phytozome | v3.1 | Brachypodium_distachyon | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Bdistachyon_Bradi3g43185.1 Bradi3g43185.1 PAC:32813205 |
High | No | 1027 | Get ORF Coding potential... Type: noncoding Potential: -1.201 Folding energies... MFEI: -30.798 AMFE: -0.546 GC content %: 56.378 | |
| Bdistachyon_Bradi3g43185.2 Bradi3g43185.2 PAC:32813209 |
High | No | 946 | Get ORF Coding potential... Type: noncoding Potential: -1.001 Folding energies... MFEI: -30.317 AMFE: -0.548 GC content %: 55.285 | |
| Bdistachyon_Bradi3g43185.3 Bradi3g43185.3 PAC:32813206 |
High | No | 1016 | Get ORF Coding potential... Type: noncoding Potential: -1.200 Folding energies... MFEI: -30.699 AMFE: -0.540 GC content %: 56.890 | |
| Bdistachyon_Bradi3g43185.4 Bradi3g43185.4 PAC:32813207 |
High | No | 1022 | Get ORF Coding potential... Type: noncoding Potential: -1.224 Folding energies... MFEI: -30.313 AMFE: -0.569 GC content %: 53.229 | |
| Bdistachyon_Bradi3g43185.5 Bradi3g43185.5 PAC:32813208 |
High | No | 1169 | Get ORF Coding potential... Type: noncoding Potential: -1.044 Folding energies... MFEI: -30.599 AMFE: -0.566 GC content %: 54.063 | |
| Bdistachyon_Bradi3g43185.6 Bradi3g43185.6 PAC:32813210 |
High | No | 1020 | Get ORF Coding potential... Type: noncoding Potential: -1.200 Folding energies... MFEI: -30.882 AMFE: -0.549 GC content %: 56.275 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
