Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Bdistachyon_Bradi3g50835 Bradi3g50835 |
Bd3 | 51682621 | 51686576 | Phytozome | v3.1 | Brachypodium_distachyon | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Bdistachyon_Bradi3g50835.1 Bradi3g50835.1 PAC:32820441 |
Low | Yes | 2136 | Get ORF Coding potential... Type: noncoding Potential: -1.001 Folding energies... MFEI: -28.404 AMFE: -0.695 GC content %: 40.871 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Bdistachyon_Bradi3g50835.1 | RepBase (RepeatMasker) | 2014-01-31 | HADES_TA | |
Bdistachyon_Bradi3g50835.1 | Rfam | 11.0 | MIR1122 | 1.3e-10 |