Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Bdistachyon_Bradi3g53885 Bradi3g53885 |
Bd3 | 54233032 | 54234728 | Phytozome | v3.1 | Brachypodium_distachyon | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Bdistachyon_Bradi3g53885.1 Bradi3g53885.1 PAC:32822344 |
High | No | 839 | Get ORF Coding potential... Type: noncoding Potential: -0.788 Folding energies... MFEI: -31.526 AMFE: -0.580 GC content %: 54.350 | |
Bdistachyon_Bradi3g53885.2 Bradi3g53885.2 PAC:32822345 |
Low | No | 822 | Get ORF Coding potential... Type: noncoding Potential: -0.786 Folding energies... MFEI: -30.645 AMFE: -0.566 GC content %: 54.136 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Bdistachyon_Bradi3g53885.2 | SwissProt | 2015-06-01 | Q5QMG3 | 2.0e-7 |