Gene
Bdistachyon Bradi3g60592
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Bdistachyon_Bradi3g60592 Bradi3g60592 |
Bd3 | 59215353 | 59218365 | Phytozome | v3.1 | Brachypodium_distachyon | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Bdistachyon_Bradi3g60592.1 Bradi3g60592.1 PAC:32817076 |
High | No | 1507 | Get ORF Coding potential... Type: noncoding Potential: -1.201 Folding energies... MFEI: -32.628 AMFE: -0.648 GC content %: 50.365 | |
| Bdistachyon_Bradi3g60592.2 Bradi3g60592.2 PAC:32817077 |
High | No | 1298 | Get ORF Coding potential... Type: noncoding Potential: -1.146 Folding energies... MFEI: -34.399 AMFE: -0.662 GC content %: 51.926 | |
| Bdistachyon_Bradi3g60592.3 Bradi3g60592.3 PAC:32817081 |
High | No | 2189 | Get ORF Coding potential... Type: noncoding Potential: -1.213 Folding energies... MFEI: -30.649 AMFE: -0.672 GC content %: 45.592 | |
| Bdistachyon_Bradi3g60592.4 Bradi3g60592.4 PAC:32817079 |
High | No | 1486 | Get ORF Coding potential... Type: noncoding Potential: -1.200 Folding energies... MFEI: -32.786 AMFE: -0.648 GC content %: 50.606 | |
| Bdistachyon_Bradi3g60592.5 Bradi3g60592.5 PAC:32817082 |
High | No | 1277 | Get ORF Coding potential... Type: noncoding Potential: -1.148 Folding energies... MFEI: -34.667 AMFE: -0.664 GC content %: 52.232 | |
| Bdistachyon_Bradi3g60592.6 Bradi3g60592.6 PAC:32817078 |
High | No | 2398 | Get ORF Coding potential... Type: noncoding Potential: -1.220 Folding energies... MFEI: -29.950 AMFE: -0.663 GC content %: 45.163 | |
| Bdistachyon_Bradi3g60592.7 Bradi3g60592.7 PAC:32817083 |
High | No | 2490 | Get ORF Coding potential... Type: noncoding Potential: -1.234 Folding energies... MFEI: -29.494 AMFE: -0.657 GC content %: 44.900 | |
| Bdistachyon_Bradi3g60592.8 Bradi3g60592.8 PAC:32817080 |
High | No | 2091 | Get ORF Coding potential... Type: noncoding Potential: -1.209 Folding energies... MFEI: -31.033 AMFE: -0.675 GC content %: 45.959 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
