Gene
Bdistachyon Bradi4g02940
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Bdistachyon_Bradi4g02940 Bradi4g02940 |
Bd4 | 2182597 | 2184968 | Phytozome | v3.1 | Brachypodium_distachyon | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Bdistachyon_Bradi4g02940.1 Bradi4g02940.1 PAC:32788713 |
Low | Yes | 704 | Get ORF Coding potential... Type: noncoding Potential: -0.976 Folding energies... MFEI: -37.372 AMFE: -0.653 GC content %: 57.244 | |
| Bdistachyon_Bradi4g02940.2 Bradi4g02940.2 PAC:32788717 |
Low | Yes | 873 | Get ORF Coding potential... Type: noncoding Potential: -1.022 Folding energies... MFEI: -35.430 AMFE: -0.640 GC content %: 55.326 | |
| Bdistachyon_Bradi4g02940.3 Bradi4g02940.3 PAC:32788718 |
Low | Yes | 843 | Get ORF Coding potential... Type: noncoding Potential: -1.056 Folding energies... MFEI: -33.654 AMFE: -0.606 GC content %: 55.516 | |
| Bdistachyon_Bradi4g02940.4 Bradi4g02940.4 PAC:32788712 |
Low | Yes | 1268 | Get ORF Coding potential... Type: noncoding Potential: -1.121 Folding energies... MFEI: -33.849 AMFE: -0.691 GC content %: 48.975 | |
| Bdistachyon_Bradi4g02940.5 Bradi4g02940.5 PAC:32788711 |
Low | Yes | 1345 | Get ORF Coding potential... Type: noncoding Potential: -1.133 Folding energies... MFEI: -34.230 AMFE: -0.700 GC content %: 48.922 | |
| Bdistachyon_Bradi4g02940.6 Bradi4g02940.6 PAC:32788716 |
Low | Yes | 956 | Get ORF Coding potential... Type: noncoding Potential: -1.042 Folding energies... MFEI: -35.921 AMFE: -0.657 GC content %: 54.707 | |
| Bdistachyon_Bradi4g02940.7 Bradi4g02940.7 PAC:32788714 |
Low | Yes | 864 | Get ORF Coding potential... Type: noncoding Potential: -1.017 Folding energies... MFEI: -35.718 AMFE: -0.642 GC content %: 55.671 | |
| Bdistachyon_Bradi4g02940.8 Bradi4g02940.8 PAC:32788715 |
Low | Yes | 1098 | Get ORF Coding potential... Type: noncoding Potential: -1.073 Folding energies... MFEI: -34.007 AMFE: -0.673 GC content %: 50.546 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
