GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Bdistachyon_Bradi4g03805 Bradi4g03805	Bd4	3060773	3062682	Phytozome	v3.1	Brachypodium_distachyon	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Bdistachyon_Bradi4g03805.1 Bradi4g03805.1 PAC:32786173	High	No	1144		Get ORF Coding potential... Type: noncoding Potential: -1.044 Folding energies... MFEI: -23.488 AMFE: -0.579 GC content %: 40.559
Bdistachyon_Bradi4g03805.2 Bradi4g03805.2 PAC:32786174	High	No	1032		Get ORF Coding potential... Type: noncoding Potential: -1.020 Folding energies... MFEI: -23.605 AMFE: -0.583 GC content %: 40.504

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).