GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Bdistachyon_Bradi4g24372 Bradi4g24372	Bd4	29417823	29427718	Phytozome	v3.1	Brachypodium_distachyon	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Bdistachyon_Bradi4g24372.1 Bradi4g24372.1 PAC:32785160	High	No	483		Get ORF Coding potential... Type: noncoding Potential: -1.038 Folding energies... MFEI: -25.528 AMFE: -0.579 GC content %: 44.099
Bdistachyon_Bradi4g24372.2 Bradi4g24372.2 PAC:32785161	High	No	527		Get ORF Coding potential... Type: noncoding Potential: -1.054 Folding energies... MFEI: -25.294 AMFE: -0.582 GC content %: 43.454

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).