Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Bdistachyon_Bradi4g25204 Bradi4g25204 |
Bd4 | 30426657 | 30428225 | Phytozome | v3.1 | Brachypodium_distachyon | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Bdistachyon_Bradi4g25204.1 Bradi4g25204.1 PAC:32790526 |
Low | Yes | 1217 | Get ORF Coding potential... Type: noncoding Potential: -0.841 Folding energies... MFEI: -38.784 AMFE: -0.743 GC content %: 52.177 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Bdistachyon_Bradi4g25204.1 | Rfam | 11.0 | MIR1122 | 1.9e-8 |
Bdistachyon_Bradi4g25204.1 | RepBase (RepeatMasker) | 2014-01-31 | TREP216 |