GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Bdistachyon_Bradi4g26716 Bradi4g26716	Bd4	31691032	31692327	Phytozome	v3.1	Brachypodium_distachyon	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Bdistachyon_Bradi4g26716.1 Bradi4g26716.1 PAC:32785653	High	No	1100		Get ORF Coding potential... Type: noncoding Potential: -0.448 Folding energies... MFEI: -34.391 AMFE: -0.689 GC content %: 49.909
Bdistachyon_Bradi4g26716.2 Bradi4g26716.2 PAC:32785654	Low	Yes	602		Get ORF Coding potential... Type: noncoding Potential: -0.302 Folding energies... MFEI: -35.033 AMFE: -0.713 GC content %: 49.169
Bdistachyon_Bradi4g26716.3 Bradi4g26716.3 PAC:32785655	Low	Yes	551		Get ORF Coding potential... Type: noncoding Potential: -0.394 Folding energies... MFEI: -36.207 AMFE: -0.720 GC content %: 50.272

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).