Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Bdistachyon_Bradi4g29212 Bradi4g29212 |
Bd4 | 34519077 | 34520894 | Phytozome | v3.1 | Brachypodium_distachyon | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Bdistachyon_Bradi4g29212.1 Bradi4g29212.1 PAC:32790786 |
Low | Yes | 698 | Get ORF Coding potential... Type: noncoding Potential: -1.057 Folding energies... MFEI: -25.544 AMFE: -0.598 GC content %: 42.693 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Bdistachyon_Bradi4g29212.1 | Rfam | 11.0 | MIR1122 | 8.0e-14 |
Bdistachyon_Bradi4g29212.1 | RepBase (RepeatMasker) | 2014-01-31 | TREP216 |