GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Bdistachyon_Bradi4g29933 Bradi4g29933	Bd4	35503909	35508869	Phytozome	v3.1	Brachypodium_distachyon	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Bdistachyon_Bradi4g29933.1 Bradi4g29933.1 PAC:32790903	High	No	1097		Get ORF Coding potential... Type: noncoding Potential: -0.874 Folding energies... MFEI: -22.691 AMFE: -0.532 GC content %: 42.662
Bdistachyon_Bradi4g29933.2 Bradi4g29933.2 PAC:32790902	High	No	1721		Get ORF Coding potential... Type: noncoding Potential: -0.930 Folding energies... MFEI: -26.589 AMFE: -0.658 GC content %: 40.383
Bdistachyon_Bradi4g29933.3 Bradi4g29933.3 PAC:32790904	High	No	1201		Get ORF Coding potential... Type: noncoding Potential: -0.886 Folding energies... MFEI: -21.875 AMFE: -0.534 GC content %: 40.966

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).