Gene

Bdistachyon Bradi4g33681

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Source Assembly Species Details

Bdistachyon_Bradi4g33681
Bradi4g33681
Bd4 39283062 39284000 Phytozome v3.1 Brachypodium_distachyon
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Sequence Details

Bdistachyon_Bradi4g33681.1
Bradi4g33681.1
PAC:32789434
Low No 273
Coding potential...
Type: noncoding Potential: -0.817
Folding energies...
MFEI: -26.740 AMFE: -0.493
GC content
%: 54.212


Matches to external databases
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The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Bdistachyon_Bradi4g33681.1  RepBase (RepeatMasker) 2014-01-31 L1-4_EPa


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Bradi4g33681.png