GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Bdistachyon_Bradi4g34255 Bradi4g34255	Bd4	39817288	39818351	Phytozome	v3.1	Brachypodium_distachyon	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Bdistachyon_Bradi4g34255.1 Bradi4g34255.1 PAC:32790325	High	No	777		Get ORF Coding potential... Type: noncoding Potential: -1.039 Folding energies... MFEI: -29.987 AMFE: -0.679 GC content %: 44.144
Bdistachyon_Bradi4g34255.2 Bradi4g34255.2 PAC:32790326	High	No	762		Get ORF Coding potential... Type: noncoding Potential: -1.034 Folding energies... MFEI: -30.052 AMFE: -0.682 GC content %: 44.094

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).