GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Bdistachyon_Bradi4g35045 Bradi4g35045	Bd4	40475098	40484305	Phytozome	v3.1	Brachypodium_distachyon	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Bdistachyon_Bradi4g35045.10 Bradi4g35045.10 PAC:32789273	High	No	1504		Get ORF Coding potential... Type: noncoding Potential: -0.974 Folding energies... MFEI: -27.254 AMFE: -0.637 GC content %: 42.753
Bdistachyon_Bradi4g35045.4 Bradi4g35045.4 PAC:32789271	High	No	2652		Get ORF Coding potential... Type: noncoding Potential: -1.026 Folding energies... MFEI: -26.893 AMFE: -0.665 GC content %: 40.460
Bdistachyon_Bradi4g35045.8 Bradi4g35045.8 PAC:32789270	High	No	1558		Get ORF Coding potential... Type: noncoding Potential: -1.042 Folding energies... MFEI: -25.822 AMFE: -0.675 GC content %: 38.254
Bdistachyon_Bradi4g35045.9 Bradi4g35045.9 PAC:32789272	High	No	2610		Get ORF Coding potential... Type: noncoding Potential: -1.024 Folding energies... MFEI: -26.613 AMFE: -0.660 GC content %: 40.345

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).