Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Bdistachyon_Bradi4g45416 Bradi4g45416 |
Bd4 | 48468147 | 48470038 | Phytozome | v3.1 | Brachypodium_distachyon | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Bdistachyon_Bradi4g45416.1 Bradi4g45416.1 PAC:32787105 |
Low | Yes | 1758 | Get ORF Coding potential... Type: noncoding Potential: -1.180 Folding energies... MFEI: -31.906 AMFE: -0.651 GC content %: 49.033 | |
Bdistachyon_Bradi4g45416.2 Bradi4g45416.2 PAC:32787106 |
High | No | 1649 | Get ORF Coding potential... Type: noncoding Potential: -1.174 Folding energies... MFEI: -31.747 AMFE: -0.631 GC content %: 50.273 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Bdistachyon_Bradi4g45416.1 | Rfam | 11.0 | MIR1122 | 4.1e-7 |
Bdistachyon_Bradi4g45416.1 | RepBase (RepeatMasker) | 2014-01-31 | TREP216 |