Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Bdistachyon_Bradi5g01207 Bradi5g01207 |
Bd5 | 1121583 | 1122498 | Phytozome | v3.1 | Brachypodium_distachyon | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Bdistachyon_Bradi5g01207.1 Bradi5g01207.1 PAC:32806945 |
Low | Yes | 624 | Get ORF Coding potential... Type: noncoding Potential: -1.206 Folding energies... MFEI: -27.628 AMFE: -0.639 GC content %: 43.269 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Bdistachyon_Bradi5g01207.1 | Rfam | 11.0 | MIR1122 | 4.5e-14 |
Bdistachyon_Bradi5g01207.1 | RepBase (RepeatMasker) | 2014-01-31 | TREP216 |