GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Bdistachyon_Bradi5g01827 Bradi5g01827	Bd5	1857184	1861852	Phytozome	v3.1	Brachypodium_distachyon	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Bdistachyon_Bradi5g01827.1 Bradi5g01827.1 PAC:32811357	High	No	2900		Get ORF Coding potential... Type: noncoding Potential: -0.938 Folding energies... MFEI: -26.279 AMFE: -0.659 GC content %: 39.897
Bdistachyon_Bradi5g01827.3 Bradi5g01827.3 PAC:32811354	High	No	2013		Get ORF Coding potential... Type: noncoding Potential: -1.269 Folding energies... MFEI: -27.273 AMFE: -0.633 GC content %: 43.070
Bdistachyon_Bradi5g01827.4 Bradi5g01827.4 PAC:32811355	High	No	2153		Get ORF Coding potential... Type: noncoding Potential: -1.279 Folding energies... MFEI: -24.268 AMFE: -0.638 GC content %: 38.040
Bdistachyon_Bradi5g01827.5 Bradi5g01827.5 PAC:32811356	High	No	2383		Get ORF Coding potential... Type: noncoding Potential: -1.293 Folding energies... MFEI: -26.383 AMFE: -0.629 GC content %: 41.922

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).