Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Bdistachyon_Bradi5g04695 Bradi5g04695 |
Bd5 | 5993834 | 6003976 | Phytozome | v3.1 | Brachypodium_distachyon | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Bdistachyon_Bradi5g04695.1 Bradi5g04695.1 PAC:32810265 |
Low | Yes | 1015 | Get ORF Coding potential... Type: noncoding Potential: -1.208 Folding energies... MFEI: -30.906 AMFE: -0.752 GC content %: 41.084 | |
Bdistachyon_Bradi5g04695.2 Bradi5g04695.2 PAC:32810266 |
High | No | 693 | Get ORF Coding potential... Type: noncoding Potential: -1.287 Folding energies... MFEI: -27.677 AMFE: -0.666 GC content %: 41.558 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Bdistachyon_Bradi5g04695.1 | Rfam | 11.0 | MIR1122 | 7.9e-16 |
Bdistachyon_Bradi5g04695.1 | RepBase (RepeatMasker) | 2014-01-31 | DNA-TA-1_ZM |