GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Bdistachyon_Bradi5g15990 Bradi5g15990	Bd5	19555780	19558483	Phytozome	v3.1	Brachypodium_distachyon	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Bdistachyon_Bradi5g15990.2 Bradi5g15990.2 PAC:32808494	High	No	1033		Get ORF Coding potential... Type: noncoding Potential: -0.913 Folding energies... MFEI: -33.272 AMFE: -0.624 GC content %: 53.340
Bdistachyon_Bradi5g15990.3 Bradi5g15990.3 PAC:32808492	High	No	1093		Get ORF Coding potential... Type: noncoding Potential: -0.831 Folding energies... MFEI: -32.900 AMFE: -0.626 GC content %: 52.516
Bdistachyon_Bradi5g15990.4 Bradi5g15990.4 PAC:32808493	High	No	977		Get ORF Coding potential... Type: noncoding Potential: -0.670 Folding energies... MFEI: -33.951 AMFE: -0.635 GC content %: 53.429

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).