Gene
Bdistachyon Bradi5g24415
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Bdistachyon_Bradi5g24415 Bradi5g24415 |
Bd5 | 26250763 | 26254075 | Phytozome | v3.1 | Brachypodium_distachyon | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Bdistachyon_Bradi5g24415.1 Bradi5g24415.1 PAC:32811412 |
High | No | 893 | Get ORF Coding potential... Type: noncoding Potential: -1.140 Folding energies... MFEI: -28.141 AMFE: -0.556 GC content %: 50.616 | |
| Bdistachyon_Bradi5g24415.10 Bradi5g24415.10 PAC:32811416 |
High | No | 2317 | Get ORF Coding potential... Type: noncoding Potential: -1.322 Folding energies... MFEI: -30.436 AMFE: -0.655 GC content %: 46.439 | |
| Bdistachyon_Bradi5g24415.2 Bradi5g24415.2 PAC:32811407 |
High | No | 2814 | Get ORF Coding potential... Type: noncoding Potential: -1.238 Folding energies... MFEI: -29.531 AMFE: -0.656 GC content %: 44.989 | |
| Bdistachyon_Bradi5g24415.3 Bradi5g24415.3 PAC:32811408 |
High | No | 2546 | Get ORF Coding potential... Type: noncoding Potential: -1.229 Folding energies... MFEI: -30.460 AMFE: -0.659 GC content %: 46.229 | |
| Bdistachyon_Bradi5g24415.4 Bradi5g24415.4 PAC:32811409 |
High | No | 1978 | Get ORF Coding potential... Type: noncoding Potential: -1.226 Folding energies... MFEI: -26.673 AMFE: -0.622 GC content %: 42.872 | |
| Bdistachyon_Bradi5g24415.5 Bradi5g24415.5 PAC:32811410 |
High | No | 2752 | Get ORF Coding potential... Type: noncoding Potential: -1.295 Folding energies... MFEI: -25.200 AMFE: -0.615 GC content %: 40.952 | |
| Bdistachyon_Bradi5g24415.6 Bradi5g24415.6 PAC:32811411 |
High | No | 2045 | Get ORF Coding potential... Type: noncoding Potential: -1.207 Folding energies... MFEI: -26.489 AMFE: -0.617 GC content %: 42.934 | |
| Bdistachyon_Bradi5g24415.7 Bradi5g24415.7 PAC:32811413 |
High | No | 1905 | Get ORF Coding potential... Type: noncoding Potential: -1.316 Folding energies... MFEI: -26.094 AMFE: -0.611 GC content %: 42.730 | |
| Bdistachyon_Bradi5g24415.8 Bradi5g24415.8 PAC:32811414 |
High | No | 1816 | Get ORF Coding potential... Type: noncoding Potential: -1.315 Folding energies... MFEI: -25.782 AMFE: -0.603 GC content %: 42.786 | |
| Bdistachyon_Bradi5g24415.9 Bradi5g24415.9 PAC:32811415 |
High | No | 2144 | Get ORF Coding potential... Type: noncoding Potential: -1.320 Folding energies... MFEI: -24.995 AMFE: -0.604 GC content %: 41.371 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
