Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
BrapaFPsc_Brara.C01703 Brara.C01703 |
A03 | 8335846 | 8337205 | Phytozome | [[Species:|]]"Species:" cannot be used as a page name in this wiki. | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
BrapaFPsc_Brara.C01703.1 Brara.C01703.1 PAC:30617924 |
High | No | 909 | Get ORF Coding potential... Type: noncoding Potential: -0.497 Folding energies... MFEI: -27.041 AMFE: -0.681 GC content %: 39.714 | |
BrapaFPsc_Brara.C01703.2 Brara.C01703.2 PAC:30617923 |
High | No | 832 | Get ORF Coding potential... Type: noncoding Potential: -0.475 Folding energies... MFEI: -26.899 AMFE: -0.676 GC content %: 39.784 | |
BrapaFPsc_Brara.C01703.3 Brara.C01703.3 PAC:30617925 |
High | No | 916 | Get ORF Coding potential... Type: noncoding Potential: -0.539 Folding energies... MFEI: -26.539 AMFE: -0.668 GC content %: 39.738 | |
BrapaFPsc_Brara.C01703.4 Brara.C01703.4 PAC:30617926 |
High | No | 993 | Get ORF Coding potential... Type: noncoding Potential: -0.558 Folding energies... MFEI: -26.697 AMFE: -0.673 GC content %: 39.678 |