GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
BrapaFPsc_Brara.F01904 Brara.F01904	A06	13247993	13249397	Phytozome		[[Species:|]]"Species:" cannot be used as a page name in this wiki.	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
BrapaFPsc_Brara.F01904.1 Brara.F01904.1 PAC:30628665	High	No	813		Get ORF Coding potential... Type: noncoding Potential: -0.572 Folding energies... MFEI: -21.771 AMFE: -0.558 GC content %: 38.991
BrapaFPsc_Brara.F01904.2 Brara.F01904.2 PAC:30628664	High	No	785		Get ORF Coding potential... Type: noncoding Potential: -0.621 Folding energies... MFEI: -21.682 AMFE: -0.560 GC content %: 38.726

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).