GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
BrapaFPsc_Brara.G01118 Brara.G01118	A07	12395063	12395881	Phytozome		[[Species:|]]"Species:" cannot be used as a page name in this wiki.	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
BrapaFPsc_Brara.G01118.1 Brara.G01118.1 PAC:30635894	High	No	526		Get ORF Coding potential... Type: noncoding Potential: -0.827 Folding energies... MFEI: -29.791 AMFE: -0.640 GC content %: 46.578
BrapaFPsc_Brara.G01118.2 Brara.G01118.2 PAC:30635893	High	No	459		Get ORF Coding potential... Type: noncoding Potential: -0.790 Folding energies... MFEI: -30.610 AMFE: -0.630 GC content %: 48.584

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).