Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
BrapaFPsc_Brara.H01991 Brara.H01991 |
A08 | 18253577 | 18254973 | Phytozome | [[Species:|]]"Species:" cannot be used as a page name in this wiki. | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
BrapaFPsc_Brara.H01991.1 Brara.H01991.1 PAC:30648240 |
High | No | 714 | Get ORF Coding potential... Type: noncoding Potential: -1.261 Folding energies... MFEI: -24.132 AMFE: -0.554 GC content %: 43.557 | |
BrapaFPsc_Brara.H01991.2 Brara.H01991.2 PAC:30648239 |
High | No | 647 | Get ORF Coding potential... Type: noncoding Potential: -1.251 Folding energies... MFEI: -23.416 AMFE: -0.535 GC content %: 43.740 | |
BrapaFPsc_Brara.H01991.3 Brara.H01991.3 PAC:30648241 |
Low | No | 672 | Get ORF Coding potential... Type: noncoding Potential: -1.066 Folding energies... MFEI: -24.152 AMFE: -0.546 GC content %: 44.196 | |
BrapaFPsc_Brara.H01991.4 Brara.H01991.4 PAC:30648242 |
High | No | 605 | Get ORF Coding potential... Type: noncoding Potential: -1.242 Folding energies... MFEI: -23.174 AMFE: -0.521 GC content %: 44.463 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
BrapaFPsc_Brara.H01991.3 | SwissProt | 2015-06-01 | Q93ZJ3 | 2.0e-6 |