GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
BrapaFPsc_Brara.J01485 Brara.J01485	A10	12991847	12992947	Phytozome		[[Species:|]]"Species:" cannot be used as a page name in this wiki.	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
BrapaFPsc_Brara.J01485.1 Brara.J01485.1 PAC:30612494	High	No	726		Get ORF Coding potential... Type: noncoding Potential: -0.819 Folding energies... MFEI: -26.377 AMFE: -0.654 GC content %: 40.358
BrapaFPsc_Brara.J01485.2 Brara.J01485.2 PAC:30612495	High	No	643		Get ORF Coding potential... Type: noncoding Potential: -0.788 Folding energies... MFEI: -25.972 AMFE: -0.637 GC content %: 40.747

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).