Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Bstricta_Bostr.14881s0009 Bostr.14881s0009 |
Scaffold14881 | 112730 | 114175 | Phytozome | [[Species:|]]"Species:" cannot be used as a page name in this wiki. | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Bstricta_Bostr.14881s0009.1 Bostr.14881s0009.1 PAC:30664856 |
Low | No | 902 | Get ORF Coding potential... Type: noncoding Potential: -0.942 Folding energies... MFEI: -24.080 AMFE: -0.603 GC content %: 39.911 | |
Bstricta_Bostr.14881s0009.2 Bostr.14881s0009.2 PAC:30664855 |
Low | No | 898 | Get ORF Coding potential... Type: noncoding Potential: -0.941 Folding energies... MFEI: -24.131 AMFE: -0.604 GC content %: 39.978 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Bstricta_Bostr.14881s0009.1 | SwissProt | 2015-06-01 | Q9SK74 | 1.0e-5 |
Bstricta_Bostr.14881s0009.2 | SwissProt | 2015-06-01 | Q9SK74 | 1.0e-5 |